1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagcgttttcattcggatgttgtgcgacgcttaacttcatttggccagACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGACTTGAACTCGACAGATTCGCAAGAGATTGTAGAGAGCGTTGCTCGAAATA
species | Selaginella moellendorffii |
transcript | EFJ07706 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAG ACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGACEST: gi|169029314|gb|FE439442.1|FE439442
genomic: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAGgtaagcgttt ... atttggccagACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGAC
EST: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAG ACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGACEST: gi|169051157|gb|FE458691.1|FE458691
genomic: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAGgtaagcgttt ... atttggccagACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGAC
EST: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAG ACATTCGCTAGAGGCCTGACGAAGACGGATACGGGAGCTCAGATGATTGACEST: gi|169114973|gb|FE516338.1|FE516338
genomic: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAGgtaagcgttt ... atttggccagACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGAC
EST: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAG ACATTCGCTAGAGGCCTGACGAAGACGGATACGGGAGCTCAGATGATTGACEST: gi|169038571|gb|FE446896.1|FE446896
genomic: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAGgtaagcgttt ... atttggccagACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGAC
EST: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAG ACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGACEST: gi|169044935|gb|FE450857.1|FE450857
genomic: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAGgtaagcgttt ... atttggccagACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGAC
EST: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAG ACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGACEST: gi|169059368|gb|FE467510.1|FE467510
genomic: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAGgtaagcgttt ... atttggccagACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGAC
EST: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAG ACATTCGCTAGAGGCCTGA
genomic: TCGCTGTGCTTTACGTCTCGGATTATGGCTACAGCGATCGACTCTCTCAGgtaagcgttt ... atttggccagACATTCGCTAGAGGCCTGA
gtaagcgttttcattcggatgttgtgcgacgcttaacttcatttggccagACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGACTTGAACTCGACAGATTCGCAAGAGATTGTAGAGAGCGTTGCTCGAAATA
gcttaac putative branch site (score: 16)
cttcattt CT-rich tract
ttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgttttcattcggatgttgtgcgacgcttaacttcatttggccagACATTCGCTAGAGGCCTGACGAAGACGGATACAGGAGCTCAGATGATTGACTTGAACTCGACAGATTCGCAAGAGATTGTAGAGAGCGTTGCTCGAAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA