Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAATTTACATTGGCCGGACACCATGTTTACCTTCGATCATGGTTCCAAAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCGgtaagtcgttgtggtctctttgacactcgtaattttctaaaatggcatttacag

Basic information

species Selaginella moellendorffii
transcript EFJ07706
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169099897|gb|FE503385.1|FE503385
EST:     AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCG                         ACTTATGATGAGGATCTCGTGACAATCGAACCACACTATCGGTTTTACTAC
genomic: AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCGgtaagtcgtt ... gcatttacagACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
EST: gi|169051157|gb|FE458691.1|FE458691
EST:     AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCG                         ACTTATGATGAGGATCTCGTGACAATCGAACCACACTATCGGTTTTACTAC
genomic: AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCGgtaagtcgtt ... gcatttacagACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
EST: gi|169061130|gb|FE470136.1|FE470136
EST:     AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCG                         ACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
genomic: AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCGgtaagtcgtt ... gcatttacagACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
EST: gi|169114973|gb|FE516338.1|FE516338
EST:     TTGGAATGCACTACTGTTCAACAGCG                         ACTTATGATGAGGATCTCGTGACAATCGAACCACACTATCGGTTTTACTAC
genomic: TTGGAATGCACTACTGTTCAACAGCGgtaagtcgtt ... gcatttacagACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
EST: gi|169038571|gb|FE446896.1|FE446896
EST:     AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCG                         ACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
genomic: AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCGgtaagtcgtt ... gcatttacagACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
EST: gi|169044935|gb|FE450857.1|FE450857
EST:     AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCG                         ACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
genomic: AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCGgtaagtcgtt ... gcatttacagACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
EST: gi|169030942|gb|FE436845.1|FE436845
EST:     AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCG                         ACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
genomic: AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCGgtaagtcgtt ... gcatttacagACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
EST: gi|169036581|gb|FE444139.1|FE444139
EST:     AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCG                         ACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
genomic: AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCGgtaagtcgtt ... gcatttacagACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC
EST: gi|169059368|gb|FE467510.1|FE467510
EST:     AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCG                         ACTTATGATGAGGATCTCGTGACAATCGAACCACACTATCGGTTTTACTAC
genomic: AAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCGgtaagtcgtt ... gcatttacagACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 53

TCCTAATTTACATTGGCCGGACACCATGTTTACCTTCGATCATGGTTCCAAAGTTCTTTTTACGTGCGATGCATTTGGAATGCACTACTGTTCAACAGCGgtaagtcgtt ... gcatttacagACTTACGATGAGGATCTCATGACAATCGAACCACACTATCGGTTTTACTACGACTGTCTCATGAAGCCGAATGCTCGGTCTGTGTTAGTCGGGCTCAAGC




<











<


<