1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttggaacttgatttggaacttgcgtcttgtgttttggcttactgaaatcgacgaacatgtgttgcagCCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATACGATTTTGCAACGTTTTGTGGAGCTGGGAATTCCAACTCCTCTTCCTGCTT
species | Selaginella moellendorffii |
transcript | EFJ07706 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAG CCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATACGEST: gi|169029314|gb|FE439442.1|FE439442
genomic: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAGgtttggaact ... tgtgttgcagCCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATACG
EST: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAG CCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATACGEST: gi|169070026|gb|FE476495.1|FE476495
genomic: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAGgtttggaact ... tgtgttgcagCCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATACG
EST: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAG CCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATACGEST: gi|169051157|gb|FE458691.1|FE458691
genomic: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAGgtttggaact ... tgtgttgcagCCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATACG
EST: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAG CCAGTTTTGATAGCAGAAAGCTATGGAGGCGACGATGAGCCCGTTGATACGEST: gi|169114973|gb|FE516338.1|FE516338
genomic: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAGgtttggaact ... tgtgttgcagCCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATACG
EST: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAG CCAGTTTTGATAGCAGAAAGCTATGGAGGCGACGATGAGCCCGTTGATACGEST: gi|169038571|gb|FE446896.1|FE446896
genomic: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAGgtttggaact ... tgtgttgcagCCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATACG
EST: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAG CCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGEST: gi|169114972|gb|FE516337.1|FE516337
genomic: CTGCAAACGCAGCCATCAGCACGCTCTACGCAGCGTTGAAAACAAAGAAGgtttggaact ... tgtgttgcagCCAGTTTTGATAGCAGAAAGTTATGGAGGCGACG
EST: ACGCAGCGTTG-AACCAAAAGAAG CCAGTTTTGATAGCAGAAAGCTATGGAGGCGACGATGAGCCCGTTGATAC
genomic: ACGCAGCGTTGAAAAC-AAAGAAGgtttggaact ... tgtgttgcagCCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATAC
ttggaacttgcgtcttgtgttttggcttactgaaatcgacgaacatgtgttgcagCCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATACGATTTTGCAACGTTTTGTGGAGCTGGGAATTCCAACTCCTCTTCCTGCTT
ggcttac putative branch site (score: 13)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggaacttgatttggaacttgcgtcttgtgttttggcttactgaaatcgacgaacatgtgttgcagCCAGTTTTGATAGCAGAAAGTTATGGAGGCGACGATGAGCCCGTTGATACGATTTTGCAACGTTTTGTGGAGCTGGGAATTCCAACTCCTCTTCCTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC