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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttctctttgaaacgaatatattgcagtgcgtttttcctcacctttatttgttgccacag

Basic information

species Selaginella moellendorffii
transcript EFJ07538
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169029102|gb|FE437605.1|FE437605
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169097619|gb|FE497411.1|FE497411
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169020853|gb|FE429292.1|FE429292
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169018825|gb|FE427010.1|FE427010
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGGACG                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169069777|gb|FE477494.1|FE477494
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169040206|gb|FE448128.1|FE448128
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGGACG                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169059646|gb|FE468880.1|FE468880
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169083270|gb|FE491886.1|FE491886
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169027332|gb|FE436178.1|FE436178
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169036354|gb|FE444705.1|FE444705
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169021937|gb|FE429050.1|FE429050
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGGACG                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169060404|gb|FE467922.1|FE467922
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: gi|169023984|gb|FE433571.1|FE433571
EST:     GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT                         CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 16

GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTGTGGATCTCATCGCAGCAAGGAATCGCACTGGCATCAACTGCCGGAGTC




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