1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagcggtctagacaacttgatgctatatatcgattcacactctctctcgttaaacacagGGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGCTTTTGCGATCGGCGAGTACTGGGACAGTTTGCTGTACGAAGGTGGAAAC
species | Selaginella moellendorffii |
transcript | EFJ07538 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGAAAACAGAGATTGGATATGATGGCTGGCGTTTAGACTTTGTCAG GGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGCEST: gi|169097619|gb|FE497411.1|FE497411
genomic: TGGCTGAAAACAGAGATTGGATATGATGGCTGGCGTTTAGACTTTGTCAGgtaagcggtc ... ttaaacacagGGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGC
EST: TGGCTGAAAACAGAGATTGGATATGATGGCTGGCGTTTAGACTTTGTCAG GGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGCEST: gi|169020853|gb|FE429292.1|FE429292
genomic: TGGCTGAAAACAGAGATTGGATATGATGGCTGGCGTTTAGACTTTGTCAGgtaagcggtc ... ttaaacacagGGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGC
EST: TGGCTGAAAACAGAGATTGGATATGATGGCTGGCGTTTAGACTTTGTCAG GGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGCEST: gi|169018825|gb|FE427010.1|FE427010
genomic: TGGCTGAAAACAGAGATTGGATATGATGGCTGGCGTTTAGACTTTGTCAGgtaagcggtc ... ttaaacacagGGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGC
EST: GTTTAGACTTTGTCAG GGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGCEST: gi|169069777|gb|FE477494.1|FE477494
genomic: GTTTAGACTTTGTCAGgtaagcggtc ... ttaaacacagGGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGC
EST: TGGCTGAAAACAGAGATTGGATATGATGGCTGGCGTTTAGACTTTGTCAG GGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGCEST: gi|169040206|gb|FE448128.1|FE448128
genomic: TGGCTGAAAACAGAGATTGGATATGATGGCTGGCGTTTAGACTTTGTCAGgtaagcggtc ... ttaaacacagGGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGC
EST: TGGCTGAAAACAGAGATTGGATATGATGGCTGGCGTTTAGACTTTGTCAG GGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGC
genomic: TGGCTGAAAACAGAGATTGGATATGATGGCTGGCGTTTAGACTTTGTCAGgtaagcggtc ... ttaaacacagGGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGC
ggtctagacaacttgatgctatatatcgattcacactctctctcgttaaacacagGGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGCTTTTGCGATCGGCGAGTACTGGGACAGTTTGCTGTACGAAGGTGGAAAC
acttgat putative branch site (score: 39)
cactctctctcgtt putative PPT
tatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcggtctagacaacttgatgctatatatcgattcacactctctctcgttaaacacagGGGATTTTGGGGAGGTTACGTGAAAGAATATATTGAAGCCAGTGAACCTGCTTTTGCGATCGGCGAGTACTGGGACAGTTTGCTGTACGAAGGTGGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA