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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGACTCATTGATCCACGACAGAAACCCCCTGGTGTTATGGGCTGGTGGCCTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtcttgcatgagttcctcaagtgactgaaagtttttattccggcacag

Basic information

species Selaginella moellendorffii
transcript EFJ07538
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ07538 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: PP1S342_20V6.1 (Physcomitrella patens), 5'ss of exon 15
GAGACTCATTGATCCACGACAGAAACCCCCTGGTGTTATGGGCTGGTGGCCTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgt----acgccgtcttgcat----gagttcctcaa----gtgactgaaagtttttattccggcacag--------------------------------------------------------------------------------------
|||| | || ||||| | |  |||||| || || || |||||||||||||||||  | || || || |||||||||||||| ||||| |||||||| |||||    || |  |||  |||    || ||  || |    || || | |||| | || |  |  |                                                                                         
GAGATTGATAGATCCTCAAGGGAAACCACCCGGAGTGATGGGCTGGTGGCCTTCTCGTGCAGTCACGTTCCTTGAGAACCATGACACCGGATCAACGCAGgtttgcactctatctaccattctagacttgatctatttggtaaccgtaagtatctagttagataattttagtcctgtatgctacaaaccactacaatcgtcgtccttgagtacttgacatgaccctgatagtgccatacgttactgttttcag

upper sequence: EFJ07538 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: PP1S100_191V6.1 (Physcomitrella patens), 5'ss of exon 12
GAGACTCATTGATCCACGACAGAAACCCCCTGGTGTTATGGGCTGGTGGCCTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtcttgcatga-gttcctcaagtgactgaaagtttttattccggcacag--------------------------------------------------------------------------------------------------------
|||| | || ||||| | |   ||||| ||||| || ||||| |||||||||||  | || || || ||||||||||| ||||| || ||||||||||||||        |  |||   ||   | |  || ||            || |  |  |                                                                                                        
GAGATTAATAGATCCTCAAGGAAAACCACCTGGAGTGATGGGTTGGTGGCCTTCTCGTGCAGTTACTTTCCTTGAGAATCACGATACCGGATCAACTCAGgtctctaccttaacattctgtcagtgatatgcctctggacgaactgtctgaaattgaaatacaatatacatgatgtagatacttatgttgtaagcttcagtgatcttcataattgagcacttgccatgccgctaacattggcacatggtgccgtctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169029102|gb|FE437605.1|FE437605
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169097619|gb|FE497411.1|FE497411
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169020853|gb|FE429292.1|FE429292
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169018825|gb|FE427010.1|FE427010
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169069777|gb|FE477494.1|FE477494
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169040206|gb|FE448128.1|FE448128
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169059646|gb|FE468880.1|FE468880
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169083270|gb|FE491886.1|FE491886
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169027332|gb|FE436178.1|FE436178
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169036354|gb|FE444705.1|FE444705
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169021937|gb|FE429050.1|FE429050
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169060404|gb|FE467922.1|FE467922
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169023984|gb|FE433571.1|FE433571
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA