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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgccgtcttgcatgagttcctcaagtgactgaaagtttttattccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT

Basic information

species Selaginella moellendorffii
transcript EFJ07538
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169029102|gb|FE437605.1|FE437605
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169097619|gb|FE497411.1|FE497411
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169020853|gb|FE429292.1|FE429292
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169018825|gb|FE427010.1|FE427010
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169069777|gb|FE477494.1|FE477494
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169040206|gb|FE448128.1|FE448128
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169059646|gb|FE468880.1|FE468880
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169083270|gb|FE491886.1|FE491886
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169027332|gb|FE436178.1|FE436178
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169036354|gb|FE444705.1|FE444705
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169021937|gb|FE429050.1|FE429050
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169060404|gb|FE467922.1|FE467922
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
EST: gi|169023984|gb|FE433571.1|FE433571
EST:     CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAG                         GGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA
genomic: CTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtc ... tccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacgccgtcttgcatgagttcctcaagtgactgaaagtttttattccggcacagGGTCATTGGCCATTTCCTCGTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT
                                      tttttattcc  CT-rich tract
                                tgaaagtttttatt  TA-rich tract