1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtttctctttgaaacgaatatattgcagtgcgtttttcctcacctttatttgttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTGTGGATCTCATCGCAGCAAGGAATCGCACTGGCATCAACTGCCGGAGTC
species | Selaginella moellendorffii |
transcript | EFJ07538 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169097619|gb|FE497411.1|FE497411
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169020853|gb|FE429292.1|FE429292
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169018825|gb|FE427010.1|FE427010
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGGACG CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169069777|gb|FE477494.1|FE477494
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169040206|gb|FE448128.1|FE448128
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGGACG CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169059646|gb|FE468880.1|FE468880
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169083270|gb|FE491886.1|FE491886
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169027332|gb|FE436178.1|FE436178
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169036354|gb|FE444705.1|FE444705
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169021937|gb|FE429050.1|FE429050
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGGACG CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169060404|gb|FE467922.1|FE467922
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTEST: gi|169023984|gb|FE433571.1|FE433571
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
EST: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACT CCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
genomic: GTGACAAACTCCTTCAAGGCTACGCATACATACTAACACATCCTGGAACTgtaagtttct ... gttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATT
ctttgaaacgaatatattgcagtgcgtttttcctcacctttatttgttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTGTGGATCTCATCGCAGCAAGGAATCGCACTGGCATCAACTGCCGGAGTC
tcctcac putative branch site (score: 16)
tttttcctcaccttta CT-rich tract
tttatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttctctttgaaacgaatatattgcagtgcgtttttcctcacctttatttgttgccacagCCTGTGATCTTCTACGATCACTTTTATGACTTTGGGCTGCGTGATCCCATTGTGGATCTCATCGCAGCAAGGAATCGCACTGGCATCAACTGCCGGAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA