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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGTGTTCGATGATTTCTCTGGTGAGGTTGCCCTTACAGCTGGTGGGGGTAGACGAGGACTTCCCCTTCTAAAAGATACGTTTGAGGACGTCGCTCTGgtgagcttaattacaatgactgaacatgagaacattccgtattttaagatcttttatgttccatggctatgcaatttacagatattgagcatgactcggg...

Basic information

species Physcomitrella patens
transcript PP1S9_51V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67724482|gb|BJ974741.1|BJ974741
EST:     AGATACGTTTGAGGACGTCGCTNTG                         GTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGGGT
genomic: AGATACGTTTGAGGACGTCGCTCTGgtgagcttaa ... ctttttgcagGTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGGGT
EST: gi|100353188|gb|BY945650.1|BY945650
EST:     GTAGACGAGGACTTCCCCTTCTAAAAGATACGTTTGAGGACGTCGCTCTG                         GTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAG
genomic: GTAGACGAGGACTTCCCCTTCTAAAAGATACGTTTGAGGACGTCGCTCTGgtgagcttaa ... ctttttgcagGTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAG
EST: gi|208366950|gb|DC951437.1|DC951437
EST:     GTAGACGAGGACTTCCCCTTCTAAAAGATACGTTTGAGGACGTCGCTATG                         GTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGGGT
genomic: GTAGACGAGGACTTCCCCTTCTAAAAGATACGTTTGAGGACGTCGCTCTGgtgagcttaa ... ctttttgcagGTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGGGT