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...tgctcttttggtttgcttcaatatattcttgaggatatgttaggtttgagttttatatatttgtgtgacttgccagtggaaagtgtgtttcgaagtgcagAAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGTCCATGTCCATCTCGAACGGAGCCACCGTGGAGACCAAGCCTCGGAAGGC
species | Physcomitrella patens |
transcript | PP1S9_51V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCGCGTCGTGGGTCGTGTAAAGGCCGCAATCGACGATTGAGGATTCAG AAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGTEST: gi|100387687|gb|BY951687.1|BY951687
genomic: ATTCGCGTCGTGGGTCGTGTAAAGGCCGCAATCGACGATTGAGGATTCAGgtgacgagac ... cgaagtgcagAAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGT
EST: ATTCGCGTCGTGGGTCGTGTAAAGGCCGCAATCGACGATTGAGGATTCAG AAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGTEST: gi|18372337|gb|BJ203939.1|BJ203939
genomic: ATTCGCGTCGTGGGTCGTGTAAAGGCCGCAATCGACGATTGAGGATTCAGgtgacgagac ... cgaagtgcagAAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGT
EST: ATTCGCGTCGTGGGTCGTGTAAAGGCCGCAATCGACGATTGAGGATTCAG AAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGTEST: gi|22492059|gb|BU051982.1|BU051982
genomic: ATTCGCGTCGTGGGTCGTGTAAAGGCCGCAATCGACGATTGAGGATTCAGgtgacgagac ... cgaagtgcagAAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGT
EST: ATTCGCGTCGTGGGTCGTGTAAAGGTTGCAATCGACGATTGAGGATTCAG AAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGTEST: gi|18367348|gb|BJ199431.1|BJ199431
genomic: ATTCGCGTCGTGGGTCGTGTAAAGGCCGCAATCGACGATTGAGGATTCAGgtgacgagac ... cgaagtgcagAAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGT
EST: ATTCGCGTCGTGGGTCGTGTAAAGGCCGCAATCGACGATTGAGGATTCAG AAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGT
genomic: ATTCGCGTCGTGGGTCGTGTAAAGGCCGCAATCGACGATTGAGGATTCAGgtgacgagac ... cgaagtgcagAAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGT
ttgagttttatatatttgtgtgacttgccagtggaaagtgtgtttcgaagtgcagAAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGTCCATGTCCATCTCGAACGGAGCCACCGTGGAGACCAAGCCTCGGAAGGC
ttttatatatttgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctcttttggtttgcttcaatatattcttgaggatatgttaggtttgagttttatatatttgtgtgacttgccagtggaaagtgtgtttcgaagtgcagAAGGAGTGGGAGGGATGGCTCAACTGCGGCCTGTGGTGAATTCTATGGAGTCCATGTCCATCTCGAACGGAGCCACCGTGGAGACCAAGCCTCGGAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - -tgcttca