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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTTGGGATTCTGTGGAGGAAGGTTATCAAGTTACACCAATCTGGCATCAGGGGTGCTTACGTGACAATGGCAGgtcagttccttgattcgttggccaccgctaataggggatttaaacttatttcttacgctagactagtcttattagtaaatgcctcattaccgaattcaaa...

Basic information

species Physcomitrella patens
transcript PP1S9_51V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100402906|gb|BY973411.1|BY973411
EST:     ATNCA-GTTACACCAATCTGGCATCAGGGGTGCTTACGTGACAATGGCAG                         CACCGATTTTGCGAAGACTGTGGGAACGGTTCGCTGGGAGTATAGTACCCG
genomic: AT-CAAGTTACACCAATCTGGCATCAGGGGTGCTTACGTGACAATGGCAGgtcagttcct ... ttgcactcagCACCGATTTTGCGAAGACTGTGGGAACGGTTCGCTGGGAGTATAGTACCCG
EST: gi|100353188|gb|BY945650.1|BY945650
EST:     TATCAAGTTACACCAATCTGGCATCAGGGGTGCTTACGTGACAATGGCAG                         CACCGATTTTGCGAAGACTGTGGGAACGGTTCGCTGGGAGTATAGTACCCG
genomic: TATCAAGTTACACCAATCTGGCATCAGGGGTGCTTACGTGACAATGGCAGgtcagttcct ... ttgcactcagCACCGATTTTGCGAAGACTGTGGGAACGGTTCGCTGGGAGTATAGTACCCG
EST: gi|100378952|gb|BY986500.1|BY986500
EST:     TATCAAGTTACACCAATCTGGCATCAGGGGTGCTTACGTGACAATGGCAG                         CACCGATTTTGCGAAGACTGTGGGAACGGT
genomic: TATCAAGTTACACCAATCTGGCATCAGGGGTGCTTACGTGACAATGGCAGgtcagttcct ... ttgcactcagCACCGATTTTGCGAAGACTGTGGGAACGGT
EST: gi|100374390|gb|BY985771.1|BY985771
EST:     TATCAAGTTACACCAATCTGGCATCAGGGGTGCTTACGTGACAATGGCAG                         CACCGATTTTGCGAAGACTGTGGGAACGGTTCGCTGGGAGTATAGTACCCG
genomic: TATCAAGTTACACCAATCTGGCATCAGGGGTGCTTACGTGACAATGGCAGgtcagttcct ... ttgcactcagCACCGATTTTGCGAAGACTGTGGGAACGGTTCGCTGGGAGTATAGTACCCG