1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCATGTCCATCTCGAACGGAGCCACCGTGGAGACCAAGCCTCGGAAGGCTGAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGGgtaagagtgaatcaatcttctgttttagagcgtgcatgtagggctgtattctatgtatgcaatttttctggggtgtgagggtgaagatgacagtgacggt...
species | Physcomitrella patens |
transcript | PP1S9_51V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGG TTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAAEST: gi|100387687|gb|BY951687.1|BY951687
genomic: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGGgtaagagtga ... tctttctcagTTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAA
EST: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGG TTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAAEST: gi|100402906|gb|BY973411.1|BY973411
genomic: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGGgtaagagtga ... tctttctcagTTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAA
EST: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGG TTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAAEST: gi|18372337|gb|BJ203939.1|BJ203939
genomic: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGGgtaagagtga ... tctttctcagTTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAA
EST: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGG TTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAAEST: gi|162227522|gb|FC403464.1|FC403464
genomic: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGGgtaagagtga ... tctttctcagTTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAA
EST: GCGCTACACGCACTCCTCACAGCGG TTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAAEST: gi|100378952|gb|BY986500.1|BY986500
genomic: GCGCTACACGCACTCCTCACAGCGGgtaagagtga ... tctttctcagTTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAA
EST: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGG TTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAAEST: gi|22492059|gb|BU051982.1|BU051982
genomic: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGGgtaagagtga ... tctttctcagTTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAA
EST: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGG TTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAAEST: gi|100374390|gb|BY985771.1|BY985771
genomic: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGGgtaagagtga ... tctttctcagTTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAA
EST: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGG TTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAAEST: gi|18367348|gb|BJ199431.1|BJ199431
genomic: GAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGGgtaagagtga ... tctttctcagTTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAA
EST: AGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACNGCCTCACAGCGG TTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTT
genomic: AGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACT-CCTCACAGCGGgtaagagtga ... tctttctcagTTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGTCCATCTCGAACGGAGCCACCGTGGAGACCAAGCCTCGGAAGGCTGAGTACCTGCCTATGCCTGCTGATCGCGCTACACGCACTCCTCACAGCGGgtaagagtgaatcaatcttctgttttagagcgtgcatgtagggctgtattctatgtatgcaatttttctggggtgtgagggtgaagatgacagtgacggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC