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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcgaacatcaaatgctctctgtctagtcactagaccttaaatcttttagaatttcttgatcctggttcaggatttgaattatgagtttttattaaagcagGAATTTTGGGATTCTGTGGAGGAAGGTTATCAAGTTACACCAATCTGGCATCAGGGGTGCTTACGTGACAATGGCAG

Basic information

species Physcomitrella patens
transcript PP1S9_51V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100402906|gb|BY973411.1|BY973411
EST:     ATGTCTCTAAGAACGGAGTAGCTCCGCCCAAGTCCGAGGTTGACCCAAAG                         GAATTTTGGGATTCTGTGGAGGAAGGTTATNCA-GTTACACCAATCTGGCA
genomic: ATGTCTCTAAGAACGGAGTAGCTCCGCCCAAGTCCGAGGTTGACCCAAAGgtatggtcta ... attaaagcagGAATTTTGGGATTCTGTGGAGGAAGGTTAT-CAAGTTACACCAATCTGGCA
EST: gi|100353188|gb|BY945650.1|BY945650
EST:     ATGTCTCTAAGAACGGAGTAGCTCCGCCCAAGTCCGAGGTTGACCCAAAG                         GAATTTTGGGATTCTGTGGAGGAAGGTTATCAAGTTACACCAATCTGGCAT
genomic: ATGTCTCTAAGAACGGAGTAGCTCCGCCCAAGTCCGAGGTTGACCCAAAGgtatggtcta ... attaaagcagGAATTTTGGGATTCTGTGGAGGAAGGTTATCAAGTTACACCAATCTGGCAT
EST: gi|100378952|gb|BY986500.1|BY986500
EST:     ATGTCTCTAAGAACGGAGTAGCTCCGCCCAAGTCCGAGGTTGACCCAAAG                         GAATTTTGGGATTCTGTGGAGGAAGGGTATCAAGTTACACCAATCTGGCAT
genomic: ATGTCTCTAAGAACGGAGTAGCTCCGCCCAAGTCCGAGGTTGACCCAAAGgtatggtcta ... attaaagcagGAATTTTGGGATTCTGTGGAGGAAGGTTATCAAGTTACACCAATCTGGCAT
EST: gi|100374390|gb|BY985771.1|BY985771
EST:     ATGTCTCTAAGAACGGAGTAGCTCCGCCCAAGTCCGAGGTTGACCCATAG                         GAATTTTGGGATTCTGTGGAGGAAGGTTATCAAGTTACACCAATCTGGCAT
genomic: ATGTCTCTAAGAACGGAGTAGCTCCGCCCAAGTCCGAGGTTGACCCAAAGgtatggtcta ... attaaagcagGAATTTTGGGATTCTGTGGAGGAAGGTTATCAAGTTACACCAATCTGGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaatttcttgatcctggttcaggatttgaattatgagtttttattaaagcagGAATTTTGGGATTCTGTGGAGGAAGGTTATCAAGTTACACCAATCTGGCATCAGGGGTGCTTACGTGACAATGGCAG
        tcttgat  putative branch site (score: 4)
                                        tttttatt  putative PPT
                          atttgaattatgagtt  TA-rich tract