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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatcactttttccactaaagtcttcttttacaagagatgtttagaaaatttattttggggattttgcgtatattgttttgcgcatctttctcaccatgagagttttcccgtggttttgcagCCACCGGGTGCTGGATCTCATCATGCACATGTCATCAGTGCAACATTCTCGGTATCATTTTTGA

Basic information

species Physcomitrella patens
transcript PP1S9_47V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162182673|gb|FC360343.1|FC360343
EST:     GAAAATTTTGTGAAGCTCGTTGCGTGGTACGACAACGAGTGGGGTTACAG                         CCACCGGGTGCTGGATCTCATCATGCACATGTCATCAGTGCAACATTCTCG
genomic: GAAAATTTTGTGAAGCTCGTTGCGTGGTACGACAACGAGTGGGGTTACAGgtgatcactt ... ggttttgcagCCACCGGGTGCTGGATCTCATCATGCACATGTCATCAGTGCAACATTCTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtatattgttttgcgcatctttctcaccatgagagttttcccgtggttttgcagCCACCGGGTGCTGGATCTCATCATGCACATGTCATCAGTGCAACATTCTCGGTATCATTTTTGA
                     ttctcac  putative branch site (score: 2)
     attgtttt  TA-rich tract