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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGGCCGCTTCGGTCGTTTGGTTGCTAGAGTCGCTCTAGAGAGTGACGACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATGgttcgtgatcctcgaactttaatgccatgctcggttgcttgcacccaaaattgagtccgcattgctctggacttaaagccggtcgaaaatctgtctcttctgattagatggttgcgatgcaattgcag

Basic information

species Physcomitrella patens
transcript PP1S9_47V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S9_47V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA06G18120.1 (Glycine max), 5'ss of exon 3
CTTCGGCCGCTTCGGTCGTTTGGTTGCTAGAGTCGCTCTAGAGAGTGACGACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATGgttcgtgatcctcgaactttaatgc-catgctcg-gttgcttgcaccca-----aaattgagtc-------------------cgcattgctctggacttaaagccggtcgaaaatctgtctcttctgattagatggttgcgatgcaattgcag----------------------
 || ||  |  | || ||||||||||| |||||||||||  | || ||||| || ||| | || || || || ||||||||||||| ||| ||||||||||| ||  | || |  |||   ||   ||| ||   |||   || | | |     |||| || |                     |  || || |    ||||      |    | | |   | || | |||  |    |  |||   ||||                         
ATTTGGAAGAATTGGCCGTTTGGTTGCCAGAGTCGCTCTGCAAAGAGACGATGTTGAACTCGTTGCCGTTAACGACCCTTTCATTACCACCGATTACATGgtacgctaaccacctactccgattttcatccttttgttctctgtaactaatcagaaatagaataagaatagctactatctctgtgtgttactttttttttaagtattattattagtgttattttttttattttaaatcttagatctgattgttaagtgtgttggttgcacatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100354749|gb|BY983546.1|BY983546
EST:     ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGGTTACATG                         GCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCT
genomic: ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATGgttcgtgatc ... gcaattgcagGCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCT
EST: gi|100441025|gb|BY962513.1|BY962513
EST:     ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATG                         GCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCT
genomic: ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATGgttcgtgatc ... gcaattgcagGCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCT
EST: gi|100409561|gb|BY955993.1|BY955993
EST:     ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATG                         GCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCT
genomic: ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATGgttcgtgatc ... gcaattgcagGCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCT