1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTTATAATCAGTCGATTGATCGATGTGGATCGATAGTGAACCTTTGTGTCTTCCAAGCAACTTTCGCGGGGTCGATTCTTCGAGgtgagtgttgcatgtcgctgtgcgccaaaggcttttaatgaggtttcgatgaggtggcagcttgggagttgtcgtgtttggtttgtgtgatcgaaagagg...
species | Physcomitrella patens |
transcript | PP1S9_47V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGTGAACCTTTGTGTCTTCCAAGCAACTTTCGCGGGGTCGATTCTTCGAG GTCGAGTCGTGCAGAATCTGAGCGCATCCATTGTAGATTTGGCCGGCCATAEST: gi|100441025|gb|BY962513.1|BY962513
genomic: AGTGAACCTTTGTGTCTTCCAAGCAACTTTCGCGGGGTCGATTCTTCGAGgtgagtgttg ... taatcttcagGTCGAGTCGTGCAGAATCTGAGCGCATCCATTGTAGATTTGGCCGGCCATA
EST: AGTGAACCTTTGTGTCTTCCAAGCAACTTTCGCGGGGTCGATTCTTCGAG GTCGAGTCGTGCAGAATCTGAGCGCATCCATTGTAGATTTGGCCGGCCATAEST: gi|67571426|gb|BJ944250.1|BJ944250
genomic: AGTGAACCTTTGTGTCTTCCAAGCAACTTTCGCGGGGTCGATTCTTCGAGgtgagtgttg ... taatcttcagGTCGAGTCGTGCAGAATCTGAGCGCATCCATTGTAGATTTGGCCGGCCATA
EST: AGTGAACCTTTGTGTCTTCCAAGCAACTTTCGCGGGGTCGATTCTTCGAG GTCGAGTCGTGCAGAATCTGAGCGCATCCATTGTAGATTTGGCCGGCCATAEST: gi|100409561|gb|BY955993.1|BY955993
genomic: AGTGAACCTTTGTGTCTTCCAAGCAACTTTCGCGGGGTCGATTCTTCGAGgtgagtgttg ... taatcttcagGTCGAGTCGTGCAGAATCTGAGCGCATCCATTGTAGATTTGGCCGGCCATA
EST: AGTGAACCTTTGTGTCTTCCAAGCAACTTTCGCGGGGTCGATTCTTCGAG GTCGAGTCGTGCAGAATCTGAGCGCATCCATTGTAGATTTGGCCGGCCATA
genomic: AGTGAACCTTTGTGTCTTCCAAGCAACTTTCGCGGGGTCGATTCTTCGAGgtgagtgttg ... taatcttcagGTCGAGTCGTGCAGAATCTGAGCGCATCCATTGTAGATTTGGCCGGCCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTATAATCAGTCGATTGATCGATGTGGATCGATAGTGAACCTTTGTGTCTTCCAAGCAACTTTCGCGGGGTCGATTCTTCGAGgtgagtgttgcatgtcgctgtgcgccaaaggcttttaatgaggtttcgatgaggtggcagcttgggagttgtcgtgtttggtttgtgtgatcgaaagagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA