1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcgtgatcctcgaactttaatgccatgctcggttgcttgcacccaaaattgagtccgcattgctctggacttaaagccggtcgaaaatctgtctcttctgattagatggttgcgatgcaattgcagGCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCTGATATCTATGCACAGGATTCGCACACGCTTTCTTTTGCCGGCAAGAAGG
species | Physcomitrella patens |
transcript | PP1S9_47V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGGTTACATG GCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCTEST: gi|100441025|gb|BY962513.1|BY962513
genomic: ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATGgttcgtgatc ... gcaattgcagGCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCT
EST: ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATG GCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCTEST: gi|100409561|gb|BY955993.1|BY955993
genomic: ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATGgttcgtgatc ... gcaattgcagGCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCT
EST: ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATG GCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCT
genomic: ACGTCGAATTGGTCGCTGTCAATGACCCTTTCATTAGCACAGATTACATGgttcgtgatc ... gcaattgcagGCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCT
taaagccggtcgaaaatctgtctcttctgattagatggttgcgatgcaattgcagGCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCTGATATCTATGCACAGGATTCGCACACGCTTTCTTTTGCCGGCAAGAAGG
ttctgat putative branch site (score: 3)
aaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgatcctcgaactttaatgccatgctcggttgcttgcacccaaaattgagtccgcattgctctggacttaaagccggtcgaaaatctgtctcttctgattagatggttgcgatgcaattgcagGCTTACATGTTCACATTCGATACGGTCCATGGCCAGAAGCTCGCCAAGTCTGATATCTATGCACAGGATTCGCACACGCTTTCTTTTGCCGGCAAGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG