1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtgcctcagttgaacatcctgtgactttgaatgcctatgctttggttagatactcttatggacttgtttctccttgttaatactggtaaagctatcacacgtacacgacttgtccttgtggacataatctttcaaaattgcttatgatggttcgtttgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
species | Physcomitrella patens |
transcript | PP1S9_381V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGATGCCTTCGGAAGEST: gi|162157673|gb|FC332995.1|FC332995
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162249090|gb|FC420367.1|FC420367
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162188292|gb|FC364786.1|FC364786
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|37840881|gb|BJ598889.1|BJ598889
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162163548|gb|FC339458.1|FC339458
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162164287|gb|FC342102.1|FC342102
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGAEST: gi|162156501|gb|FC332109.1|FC332109
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGA
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162249089|gb|FC420366.1|FC420366
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162185270|gb|FC361780.1|FC361780
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162257436|gb|FC433310.1|FC433310
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162181563|gb|FC357865.1|FC357865
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162181564|gb|FC357866.1|FC357866
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162247767|gb|FC421735.1|FC421735
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162245446|gb|FC421348.1|FC421348
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|67579201|gb|BJ951346.1|BJ951346
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGEST: gi|162245447|gb|FC421349.1|FC421349
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAAATGA-GACNAATATCGEST: gi|162188291|gb|FC364785.1|FC364785
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAA-TGAAGACAAATATCG
EST: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAG GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
genomic: AGTCCTTCTGAAACCAATGCAACTATTCAAGTATTGTTCACTATTTTCAGgtatgtgcct ... tgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
gtccttgtggacataatctttcaaaattgcttatgatggttcgtttgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
ttcgttt CT-rich tract
ataatctttcaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgcctcagttgaacatcctgtgactttgaatgcctatgctttggttagatactcttatggacttgtttctccttgttaatactggtaaagctatcacacgtacacgacttgtccttgtggacataatctttcaaaattgcttatgatggttcgtttgtactgtagGAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA