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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAGgtaagctatggttcaaaaacttaggttgttgtgaccgtcatcgtcgtcgtcgtccgctgttcttgactgtcataatgaaagttgtgttgtgattttttatacgccgacttggctttttgattctattattatcctaactaatggaatttaccgcttgaaacag

Basic information

species Physcomitrella patens
transcript PP1S9_381V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162153922|gb|FC329429.1|FC329429
EST:     ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAG                         CTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
genomic: ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAGgtaagctatg ... cttgaaacagCTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
EST: gi|162185271|gb|FC361781.1|FC361781
EST:     ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAG                         CTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
genomic: ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAGgtaagctatg ... cttgaaacagCTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
EST: gi|162156502|gb|FC332110.1|FC332110
EST:     ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAG                         CTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
genomic: ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAGgtaagctatg ... cttgaaacagCTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
EST: gi|162163549|gb|FC339459.1|FC339459
EST:     ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAG                         CTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
genomic: ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAGgtaagctatg ... cttgaaacagCTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
EST: gi|162167395|gb|FC343098.1|FC343098
EST:     ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAG                         CTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
genomic: ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAGgtaagctatg ... cttgaaacagCTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
EST: gi|162244461|gb|FC422634.1|FC422634
EST:     ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAG                         CTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
genomic: ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAGgtaagctatg ... cttgaaacagCTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
EST: gi|100413113|gb|BY992593.1|BY992593
EST:     ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAG                         CTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
genomic: ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAGgtaagctatg ... cttgaaacagCTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
EST: gi|162159143|gb|FC334314.1|FC334314
EST:     ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAG                         CTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
genomic: ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAGgtaagctatg ... cttgaaacagCTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
EST: gi|162257437|gb|FC433311.1|FC433311
EST:     ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAG                         CTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT
genomic: ACATGGTCCACGATGAACATGACGAACACTTCCATGCTCTGGACAAGCAGgtaagctatg ... cttgaaacagCTAAACCAGGAAGCAATCGCTTTGGACTGGACGAAATCCGCTGGACACACT