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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGATGGCAGGTGGGAGTAATGACAGAGATGGCTCCAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccggcaagttggccatttcgatttgtaactttggattcagtaagcttccaaattaatgaagcactcaggataaaatgtatgggtactgtattggaaaagacttgatgtatattctaaaaaatatttacgcatttcctgtatgtgtag

Basic information

species Physcomitrella patens
transcript PP1S9_381V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162153922|gb|FC329429.1|FC329429
EST:     CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG                         AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
EST: gi|162156502|gb|FC332110.1|FC332110
EST:     CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG                         AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
EST: gi|162163549|gb|FC339459.1|FC339459
EST:     CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG                         AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
EST: gi|162167395|gb|FC343098.1|FC343098
EST:     CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG                         AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
EST: gi|162244461|gb|FC422634.1|FC422634
EST:     CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG                         AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
EST: gi|162257437|gb|FC433311.1|FC433311
EST:     CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG                         AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC