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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtgcactcagatgaatcatccgctagcattaacttttttacctcttgtcagttacagttgtggggctttatggggattatggtgtatcttttc...

Basic information

species Physcomitrella patens
transcript PP1S9_381V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162167394|gb|FC343097.1|FC343097
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGATGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162157673|gb|FC332995.1|FC332995
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162249090|gb|FC420367.1|FC420367
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162188292|gb|FC364786.1|FC364786
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|37840881|gb|BJ598889.1|BJ598889
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162163548|gb|FC339458.1|FC339458
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162156501|gb|FC332109.1|FC332109
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|19789265|gb|BQ041203.1|BQ041203
EST:     TCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: TCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162169364|gb|FC346254.1|FC346254
EST:     ATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: ATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162249089|gb|FC420366.1|FC420366
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162185270|gb|FC361780.1|FC361780
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162257436|gb|FC433310.1|FC433310
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162181563|gb|FC357865.1|FC357865
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162181564|gb|FC357866.1|FC357866
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162247767|gb|FC421735.1|FC421735
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162245446|gb|FC421348.1|FC421348
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|67579201|gb|BJ951346.1|BJ951346
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
EST: gi|162188291|gb|FC364785.1|FC364785
EST:     GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG                         GGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... aactttgcagGGTAATCCTACTTTTCATAATCGGGTTGCTAAGTTCACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtgcactcagatgaatcatccgctagcattaacttttttacctcttgtcagttacagttgtggggctttatggggattatggtgtatcttttc

- - - - - - - - - -  TGAAGA