1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cgctttgcacctaatgttagctaatcaaagaacatatatttgtttgcagtttttgtgtgagaaagggtattttcttattgtctcgctcgttgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGCTCTTACCACCAATGTGGTGATGACCTCTGCAGCTGTCACCGCATCGGCC
species | Physcomitrella patens |
transcript | PP1S9_109V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACAT ATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGCEST: gi|208382437|gb|DC927971.1|DC927971
genomic: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACATgtatgttttc ... tgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGC
EST: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACAT ATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGCEST: gi|37825209|gb|BJ583275.1|BJ583275
genomic: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACATgtatgttttc ... tgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGC
EST: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACAT ATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGCEST: gi|162160071|gb|FC335941.1|FC335941
genomic: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACATgtatgttttc ... tgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGC
EST: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACAT ATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGCEST: gi|18336692|gb|BJ168715.1|BJ168715
genomic: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACATgtatgttttc ... tgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGC
EST: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACAT ATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGCEST: gi|37841090|gb|BJ599098.1|BJ599098
genomic: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACATgtatgttttc ... tgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGC
EST: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACAT ATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGCEST: gi|162246481|gb|FC419965.1|FC419965
genomic: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACATgtatgttttc ... tgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGC
EST: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACAT ATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGCEST: gi|208351293|gb|DC922072.1|DC922072
genomic: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACATgtatgttttc ... tgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGC
EST: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACAT ATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGCEST: gi|162171467|gb|FC346742.1|FC346742
genomic: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACATgtatgttttc ... tgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGC
EST: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACAT ATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGC
genomic: ATTGATTCGAAGATGGGCACTGTTGTGATGGGCACTCAGCACCCTAACATgtatgttttc ... tgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGC
gcagtttttgtgtgagaaagggtattttcttattgtctcgctcgttgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGCTCTTACCACCAATGTGGTGATGACCTCTGCAGCTGTCACCGCATCGGCC
tattttcttattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgctttgcacctaatgttagctaatcaaagaacatatatttgtttgcagtttttgtgtgagaaagggtattttcttattgtctcgctcgttgtgattcagATACGAACAAATTATTGAGAAGACCAAAGTTCTTGGTCAGCGCAGTTATGCTCTTACCACCAATGTGGTGATGACCTCTGCAGCTGTCACCGCATCGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG