1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCTGCAGCAGCGGACGTGGTTGATGCACTGGAGTCTTTTCATCTTCTTCAACCATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAGgtatcgtttcattaaagtggacttcattcgtttacatgagacattaagtctgatattgtacggattgtctagatttcgtgtccagtcaagatggaatatgcttattaattttatcttgttaattttatgttcggtacatgttgtggatagttgtcccaatgcgctttgttttgagcagcttgatttcatcacatttgcag
species | Physcomitrella patens |
transcript | PP1S9_109V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AACCATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAG GTACCTAAATGCAATCCAGACAAGTGCGCATCACTTGTTGCGCTACTTGGCEST: gi|208382437|gb|DC927971.1|DC927971
genomic: AACCATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAGgtatcgtttc ... acatttgcagGTACCTAAATGCAATCCAGACAAGTGCGCATCACTTGTTGCGCTACTTGGC
EST: AACCATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAG GTACCTAAATGCAATCCAGACAAGTGCGCATCACTTGTTGCGCTACTTGGCEST: gi|162160071|gb|FC335941.1|FC335941
genomic: AACCATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAGgtatcgtttc ... acatttgcagGTACCTAAATGCAATCCAGACAAGTGCGCATCACTTGTTGCGCTACTTGGC
EST: ATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAG GTACCTAAATGCAATCCAGACAAGTGCGCATCACTTGTTGCGCTACTTGGCEST: gi|162171468|gb|FC346743.1|FC346743
genomic: ATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAGgtatcgtttc ... acatttgcagGTACCTAAATGCAATCCAGACAAGTGCGCATCACTTGTTGCGCTACTTGGC
EST: AACCATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAG GTACCTAAATGCAATCCAGACAAGTGCGCATCACTTGTTGCGCTACTTGGCEST: gi|162166958|gb|FC343343.1|FC343343
genomic: AACCATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAGgtatcgtttc ... acatttgcagGTACCTAAATGCAATCCAGACAAGTGCGCATCACTTGTTGCGCTACTTGGC
EST: AACCATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAG GTACCTAAATGCAATCCAGACAAGTGCGCATCACTTGTTGCGCTACTTGGC
genomic: AACCATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAGgtatcgtttc ... acatttgcagGTACCTAAATGCAATCCAGACAAGTGCGCATCACTTGTTGCGCTACTTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGCAGCAGCGGACGTGGTTGATGCACTGGAGTCTTTTCATCTTCTTCAACCATGACAGTGGAAGGAATGGCATCATTGACTTGTTCTTCTCTGAAAGgtatcgtttcattaaagtggacttcattcgtttacatgagacattaagtctgatattgtacggattgtctagatttcgtgtccagtcaagatggaatatgcttattaattttatcttgttaattttatgttcggtacatgttgtggatagttgtcccaatgcgctttgttttgagcagcttgatttcatcacatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA