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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTCACCACTCATCAGCTTCTTACAGAACCCAGCTCTTGTTCAAGAATTACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggttttcgctcaagaagtaatttacagaatgaatggtttttatccgtagttgaaactgctaatttagttcaactatgactaggttgagcctgcgct...

Basic information

species Physcomitrella patens
transcript PP1S9_109V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100398534|gb|BY972660.1|BY972660
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTACAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|19790100|gb|BQ041695.1|BQ041695
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|208396897|gb|DC908189.1|DC908189
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|208354961|gb|DC914225.1|DC914225
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|67717505|gb|BJ967764.1|BJ967764
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|100414960|gb|BY956947.1|BY956947
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|162171468|gb|FC346743.1|FC346743
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|208348620|gb|DC905857.1|DC905857
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|208368174|gb|DC931428.1|DC931428
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|100402664|gb|BY954948.1|BY954948
EST:     TACGATCTGATAAGCGTTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|18363928|gb|BJ196000.1|BJ196000
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|100394165|gb|BY971971.1|BY971971
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
EST: gi|67508674|gb|BJ941535.1|BJ941535
EST:     TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAG                         ATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC
genomic: TACGATCTGATAAGCATTACAACCTCCAAATGTTGCAGGAACGACACCAGgttaggtttt ... ggattttcagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTC