1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCGCTACACGTACAGCGATCCGATTACTGAATTTTTGGAGTGCTTGTATGTAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAGgtgaggttcggtaattttattttgtaggtgttaggtttacgacctcattacttatatggaatgagttggtttgagcggtttcttcagtatttctaatgat...
species | Physcomitrella patens |
transcript | PP1S9_109V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTTEST: gi|208382437|gb|DC927971.1|DC927971
genomic: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAGgtgaggttcg ... gtctttgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTT
EST: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTTEST: gi|37825209|gb|BJ583275.1|BJ583275
genomic: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAGgtgaggttcg ... gtctttgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTT
EST: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTTEST: gi|162160071|gb|FC335941.1|FC335941
genomic: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAGgtgaggttcg ... gtctttgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTT
EST: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCCTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTTEST: gi|208351293|gb|DC922072.1|DC922072
genomic: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAGgtgaggttcg ... gtctttgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTT
EST: TAGATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTTEST: gi|162171467|gb|FC346742.1|FC346742
genomic: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAGgtgaggttcg ... gtctttgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTT
EST: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTTEST: gi|162166958|gb|FC343343.1|FC343343
genomic: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAGgtgaggttcg ... gtctttgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTT
EST: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTT
genomic: TAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAGgtgaggttcg ... gtctttgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAACAAACATCTGAAAACGGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCTACACGTACAGCGATCCGATTACTGAATTTTTGGAGTGCTTGTATGTAAATTATGATTTCGAAGGAGCTCAGAAGAAGCTTCGTGAATGTGAAGAGgtgaggttcggtaattttattttgtaggtgttaggtttacgacctcattacttatatggaatgagttggtttgagcggtttcttcagtatttctaatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA