1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acgtctcagaaatagtaataggacagcaaaggcgaccgtggcattttcttccaacatggtgccctgattgcagttgtttttattgttttatgtgttgcagAACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCACTGGAGTCTTTTCATCTTCTTCAACCATGACAGTGGAAGGAATGGCATCA
species | Physcomitrella patens |
transcript | PP1S9_109V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTGGCAACCGAGGAGTTGAATCGGCTGAAGGAAATTATTGATTCCAAG AACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCACEST: gi|208396897|gb|DC908189.1|DC908189
genomic: ATGTGGCAACCGAGGAGTTGAATCGGCTGAAGGAAATTATTGATTCCAAGgtatggtcac ... tgtgttgcagAACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCAC
EST: ATGTGGCAACCGAGGAGTTGAATCGGCTGAAGGAA-TTATTGATTCCAA- AACTTTGCTTCTCCTCTGAEST: gi|208382437|gb|DC927971.1|DC927971
genomic: ATGTGGCAACCGAGGAGTTGAATCGGCTGAAGGAAATTATTGATTCCAAGgtatggtcac ... tgtgttgcagAACTTTGCTTCTCCTCTGA
EST: GCTGNAGGAAATTATTGATTCCCAG AACTTNG-NTCTCCTNTGNATCAGCTGCAGCAGCGGACGTGGTTGATGCACEST: gi|162171468|gb|FC346743.1|FC346743
genomic: GCTGAAGGAAATTATTGATTCCAAGgtatggtcac ... tgtgttgcagAACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCAC
EST: ATGTGGCAACCGAGGAGTTGAATCGGCTGAAGGAAATTATTGATTCCAAG AACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCACEST: gi|100402664|gb|BY954948.1|BY954948
genomic: ATGTGGCAACCGAGGAGTTGAATCGGCTGAAGGAAATTATTGATTCCAAGgtatggtcac ... tgtgttgcagAACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCAC
EST: ATGTGGCAACCGAGGAGTTGAATCGGCTGAAGGAAATTATTGATTCCAAG AACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCACEST: gi|162166958|gb|FC343343.1|FC343343
genomic: ATGTGGCAACCGAGGAGTTGAATCGGCTGAAGGAAATTATTGATTCCAAGgtatggtcac ... tgtgttgcagAACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCAC
EST: ATGTGGCAACCGAGGAGTTGAATCGGCTGAAGGAAATTATTGATTCCAAG AACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCAC
genomic: ATGTGGCAACCGAGGAGTTGAATCGGCTGAAGGAAATTATTGATTCCAAGgtatggtcac ... tgtgttgcagAACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCAC
ttcttccaacatggtgccctgattgcagttgtttttattgttttatgtgttgcagAACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCACTGGAGTCTTTTCATCTTCTTCAACCATGACAGTGGAAGGAATGGCATCA
ccctgat putative branch site (score: 6)
ttgtttttattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgtctcagaaatagtaataggacagcaaaggcgaccgtggcattttcttccaacatggtgccctgattgcagttgtttttattgttttatgtgttgcagAACTTTGCTTCTCCTCTGAATCAGCTGCAGCAGCGGACGTGGTTGATGCACTGGAGTCTTTTCATCTTCTTCAACCATGACAGTGGAAGGAATGGCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA