1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATAAACGCCATTTTCTATTTCTCATCAGCAGTTTTCAAAAGTGCTGGTATTACGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAGgttatcatcaaatactattaccagtgttattcttttctgataaatggatgttgctgtatagcagtcctgcactcattgaagcgtagatgttttgcagttgaaatttaacaaataggattagatattatctttgattgcaagtttcttatattagtgtttattttgcag
species | Physcomitrella patens |
transcript | PP1S99_154V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TACGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAG CTTCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTTAEST: gi|162255891|gb|FC431967.1|FC431967
genomic: TACGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAGgttatcatca ... tattttgcagCTTCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTTA
EST: TACGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAG CTTCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTTAEST: gi|37846090|gb|BJ604098.1|BJ604098
genomic: TACGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAGgttatcatca ... tattttgcagCTTCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTTA
EST: CGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAG CTTCCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTT
genomic: CGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAGgttatcatca ... tattttgcagCTT-CATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAACGCCATTTTCTATTTCTCATCAGCAGTTTTCAAAAGTGCTGGTATTACGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAGgttatcatcaaatactattaccagtgttattcttttctgataaatggatgttgctgtatagcagtcctgcactcattgaagcgtagatgttttgcagttgaaatttaacaaataggattagatattatctttgattgcaagtttcttatattagtgtttattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG