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...gattacggtacacaggaatggttgtagtttctaaattactaaatgaatgcccatcgtgatgcgtttaatctgaaatttaagcttaattttttatttgcagAGTTTGGCTATGGCAGCACAAGCAGCTACAGCAACTATACCTGTATTGAGCGCAGCCAAAGGAGCAGTGGCTCTTGTGGGCACTTTAGC
species | Physcomitrella patens |
transcript | PP1S99_154V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGATAAAGTTGGTCGACGTAGTCTTATGATTTATAGTTTCACTGGAATG AGTTTGGCTATGGCAGCACAAGCAGCTACAGCAACTATACCTGTATTGAGCEST: gi|162255891|gb|FC431967.1|FC431967
genomic: TGGATAAAGTTGGTCGACGTAGTCTTATGATTTATAGTTTCACTGGAATGgtaagttcat ... ttatttgcagAGTTTGGCTATGGCAGCACAAGCAGCTACAGCAACTATACCTGTATTGAGC
EST: TGGATAAAGTTGGTCGACGTAGTCTTATGATTTATAGTTTCACTGGAATG AGTTTGGCTATGGCAGCACAAGCAGCTACAGCAACTATACCTGTATTGAGCEST: gi|37846090|gb|BJ604098.1|BJ604098
genomic: TGGATAAAGTTGGTCGACGTAGTCTTATGATTTATAGTTTCACTGGAATGgtaagttcat ... ttatttgcagAGTTTGGCTATGGCAGCACAAGCAGCTACAGCAACTATACCTGTATTGAGC
EST: TGGATAAAGTTGGTCGACGTAGTCTTATGATTTATAGTTTCACTGGAATG AGTTTGGCTATGGCAGCACAAGCAGCTACAGCAACTATACCTGTATTGAGC
genomic: TGGATAAAGTTGGTCGACGTAGTCTTATGATTTATAGTTTCACTGGAATGgtaagttcat ... ttatttgcagAGTTTGGCTATGGCAGCACAAGCAGCTACAGCAACTATACCTGTATTGAGC
aatgcccatcgtgatgcgtttaatctgaaatttaagcttaattttttatttgcagAGTTTGGCTATGGCAGCACAAGCAGCTACAGCAACTATACCTGTATTGAGCGCAGCCAAAGGAGCAGTGGCTCTTGTGGGCACTTTAGC
gcttaat putative branch site (score: 33)
ttttttattt CT-rich tract
tttaatctgaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattacggtacacaggaatggttgtagtttctaaattactaaatgaatgcccatcgtgatgcgtttaatctgaaatttaagcttaattttttatttgcagAGTTTGGCTATGGCAGCACAAGCAGCTACAGCAACTATACCTGTATTGAGCGCAGCCAAAGGAGCAGTGGCTCTTGTGGGCACTTTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG