1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttatcatcaaatactattaccagtgttattcttttctgataaatggatgttgctgtatagcagtcctgcactcattgaagcgtagatgttttgcagttgaaatttaacaaataggattagatattatctttgattgcaagtttcttatattagtgtttattttgcagCTTCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTTATGATTTATAGTTTCACTGGAATG
species | Physcomitrella patens |
transcript | PP1S99_154V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TACGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAG CTTCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTTAEST: gi|162255891|gb|FC431967.1|FC431967
genomic: TACGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAGgttatcatca ... tattttgcagCTTCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTTA
EST: TACGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAG CTTCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTTAEST: gi|37846090|gb|BJ604098.1|BJ604098
genomic: TACGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAGgttatcatca ... tattttgcagCTTCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTTA
EST: CGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAG CTTCCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTT
genomic: CGTCAGAAGTGGGAGCAAGTGTTGCCGTGGGAGTGGTGAACTTTATAGgttatcatca ... tattttgcagCTT-CATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTT
aggattagatattatctttgattgcaagtttcttatattagtgtttattttgcagCTTCATGTTTGGCTTGCTACTTGATGGATAAAGTTGGTCGACGTAGTCTTATGATTTATAGTTTCACTGGAATG
ctttgat putative branch site (score: 19)
tttatttt putative PPT
tttcttatattagtgt TA-rich tract