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gtaagattttgatttcatactgtttttcttggaatttacttcgataccagctttcctctgaacttgaatgtcatttagtctttgaactgtatataacttaataatttgaaatgatgtttagtatactaagtcaatacaatcttgaacctacatactaactacttcaaattttgtattatgcagGTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTGGGAACTGGTACCGTATACACCGGCTTCGCAACCATTTGTCTTGCTGCTG
species | Physcomitrella patens |
transcript | PP1S99_154V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCAATCAAATTCGAGCAAAGGCCTTATCAGTCGCTATGTGTGTTCATTGG GTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTGEST: gi|162255891|gb|FC431967.1|FC431967
genomic: CCAATCAAATTCGAGCAAAGGCCTTATCAGTCGCTATGTGTGTTCATTGGgtaagatttt ... tattatgcagGTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTG
EST: CCAATCAAATTCGAGCAAAGGCCTTATCAGTCGCTATGTGTGTTCATTGG GTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTGEST: gi|162255890|gb|FC431966.1|FC431966
genomic: CCAATCAAATTCGAGCAAAGGCCTTATCAGTCGCTATGTGTGTTCATTGGgtaagatttt ... tattatgcagGTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTG
EST: TCAGTCGCTATGTGTGTTCATTGG GTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTGEST: gi|37846971|gb|BJ604979.1|BJ604979
genomic: TCAGTCGCTATGTGTGTTCATTGGgtaagatttt ... tattatgcagGTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTG
EST: CCAATCAAATTCGAGCAAAGGCCTTATCAGTCGCTATGTGTGTTCATTGG GTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTGEST: gi|162276494|gb|FC452172.1|FC452172
genomic: CCAATCAAATTCGAGCAAAGGCCTTATCAGTCGCTATGTGTGTTCATTGGgtaagatttt ... tattatgcagGTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTG
EST: CCAATCAAATTCGAGCAAAGGCCTTATCAGTCGCTATGTGTGTTCATTGG GTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTGEST: gi|37846090|gb|BJ604098.1|BJ604098
genomic: CCAATCAAATTCGAGCAAAGGCCTTATCAGTCGCTATGTGTGTTCATTGGgtaagatttt ... tattatgcagGTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTG
EST: CCAATCAAATTCGAGCAAAGGCCTTATCAGTCGCTATGTGTGTTCATTGG GTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTG
genomic: CCAATCAAATTCGAGCAAAGGCCTTATCAGTCGCTATGTGTGTTCATTGGgtaagatttt ... tattatgcagGTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTG
agtcaatacaatcttgaacctacatactaactacttcaaattttgtattatgcagGTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTGGGAACTGGTACCGTATACACCGGCTTCGCAACCATTTGTCTTGCTGCTG
tactaac putative branch site (score: 22)
ttcaaattttgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattttgatttcatactgtttttcttggaatttacttcgataccagctttcctctgaacttgaatgtcatttagtctttgaactgtatataacttaataatttgaaatgatgtttagtatactaagtcaatacaatcttgaacctacatactaactacttcaaattttgtattatgcagGTAGCCAATTTTACAGTCGGATTGACATTTTTATCCTTGTTGAAGAAGTTGGGAACTGGTACCGTATACACCGGCTTCGCAACCATTTGTCTTGCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT