1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcaatccgctttggtacttccatcttgcaagcttcagaattcagagccttgataactgctttgtttagaaatacttgacctctttctccttttttaatagGTCATGCATGGCTACTGCGATGCTGCTTTACTACCGGCTCTCTCAGAGCGCAGGCTTTACAGAGGATGCAGATTCGGATGAACAGTGACATTCGACTTTG
species | Physcomitrella patens |
transcript | PP1S98_141V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGCTCATCCACAGTGGATGTCAGAAAATTGATTCTTTTATTTGCTATTAT GTCATGCATGGCTACTGCGATGCTGCTTTACTACCGGCTCTCTCAGAGCGCEST: gi|162266972|gb|FC443047.1|FC443047
genomic: CGCTCATCCACAGTGGATGTCAGAAAATTGATTCTTTTATTTGCTATTATgtaagtttcg ... tttttaatagGTCATGCATGGCTACTGCGATGCTGCTTTACTACCGGCTCTCTCAGAGCGC
EST: CGCTCATCCACAGTGGATGTCAGAAAATTGATTCTTTTATTTGCTATTAT GTCATGCATGGCTACTGCGATGCTGCTTTACTACCGGCTCTCTCAGAGCGCEST: gi|37831744|gb|BJ589756.1|BJ589756
genomic: CGCTCATCCACAGTGGATGTCAGAAAATTGATTCTTTTATTTGCTATTATgtaagtttcg ... tttttaatagGTCATGCATGGCTACTGCGATGCTGCTTTACTACCGGCTCTCTCAGAGCGC
EST: CGCTCATCCACAGTGGATGTCAGAAAATTGATTCTTTTATTTGCTATTAT GTCATGCATGGCTACTGCGATGCTGCTTTACTACCGGCTCTCTCAGAGCGCEST: gi|162230262|gb|FC406618.1|FC406618
genomic: CGCTCATCCACAGTGGATGTCAGAAAATTGATTCTTTTATTTGCTATTATgtaagtttcg ... tttttaatagGTCATGCATGGCTACTGCGATGCTGCTTTACTACCGGCTCTCTCAGAGCGC
EST: CGCTCATCCACAGTGGATGTCAGAAAATTGATTCTTTTATTTGCTATTAT GTCATGCATGGCTACTGCGATGCTGCTTTACTACCGGCTCTCTCAGAGCGC
genomic: CGCTCATCCACAGTGGATGTCAGAAAATTGATTCTTTTATTTGCTATTATgtaagtttcg ... tttttaatagGTCATGCATGGCTACTGCGATGCTGCTTTACTACCGGCTCTCTCAGAGCGC
gccttgataactgctttgtttagaaatacttgacctctttctccttttttaatagGTCATGCATGGCTACTGCGATGCTGCTTTACTACCGGCTCTCTCAGAGCGCAGGCTTTACAGAGGATGCAGATTCGGATGAACAGTGACATTCGACTTTG
tacttgacctctttct CT-rich tract
tttgtttagaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatccgctttggtacttccatcttgcaagcttcagaattcagagccttgataactgctttgtttagaaatacttgacctctttctccttttttaatagGTCATGCATGGCTACTGCGATGCTGCTTTACTACCGGCTCTCTCAGAGCGCAGGCTTTACAGAGGATGCAGATTCGGATGAACAGTGACATTCGACTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT