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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgagttggaaaactttcttccccaaatctattttgtgacagaagtttgtactattcttctaaaacattcgttcctaaactatgaattatctggagatgcttagaattgaattttctagtttgtagcaagaattttgagtcagattttaatctcactgcttcttgtagCAATCACAACCAGGAGCCACAACACGTAAGCATGCTATGCGTATAGATAGATCGCAGTCTGGAAATTATGTGGAACATGATGACAAGTATTCCAAAAGAG

Basic information

species Physcomitrella patens
transcript PP1S98_141V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67693930|gb|BJ954163.1|BJ954163
EST:     TCAATATAATTTCACCTGAATCTCGGTTTTCCAAGGCCTCTTCAGCAAAT                         CAATCACAACCAGGAGCCACAACACGTAAGCATGCTATGCGTATAGATAGA
genomic: TCAATATAATTTCACCTGAATCTCGGTTTTCCAAGGCCTCTTCAGCAAATgtaagtgagt ... cttcttgtagCAATCACAACCAGGAGCCACAACACGTAAGCATGCTATGCGTATAGATAGA
EST: gi|162266972|gb|FC443047.1|FC443047
EST:     TCAATATAATTTCACCTGAATCTCGGTTTTCCAAGGCCTCTTCAGCAAAT                         CAATCACAACCAGGAGCCACAACACGTAAGCATGCTATGCGTATAGATAGA
genomic: TCAATATAATTTCACCTGAATCTCGGTTTTCCAAGGCCTCTTCAGCAAATgtaagtgagt ... cttcttgtagCAATCACAACCAGGAGCCACAACACGTAAGCATGCTATGCGTATAGATAGA
EST: gi|37831744|gb|BJ589756.1|BJ589756
EST:     TCAATATAATTTCACCTGAATCTCGGTTTTCCAAGGCCTCTTCAGCAAAT                         CAATCACAACCAGGAGCCACAACACGTAAGCATGCTATGCGTATAGATAGA
genomic: TCAATATAATTTCACCTGAATCTCGGTTTTCCAAGGCCTCTTCAGCAAATgtaagtgagt ... cttcttgtagCAATCACAACCAGGAGCCACAACACGTAAGCATGCTATGCGTATAGATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctagtttgtagcaagaattttgagtcagattttaatctcactgcttcttgtagCAATCACAACCAGGAGCCACAACACGTAAGCATGCTATGCGTATAGATAGATCGCAGTCTGGAAATTATGTGGAACATGATGACAAGTATTCCAAAAGAG
                                    atctcac  putative branch site (score: 3)
                                     tctcactgcttctt  CT-rich tract
                            agattttaat  TA-rich tract