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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatgatcggaaagtttgtcgataaatcttgcaatgtctccgtttgtgttgtcttttgatgagatgtgcaaagctgaatgcggctataattgaattgtagATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCT

Basic information

species Physcomitrella patens
transcript PP1S98_141V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100419891|gb|BY975898.1|BY975898
EST:     GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTAC                         ATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC
genomic: GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTACgtgagttttt ... tgaattgtagATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC
EST: gi|162266973|gb|FC443048.1|FC443048
EST:     GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTAC                         ATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC
genomic: GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTACgtgagttttt ... tgaattgtagATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC
EST: gi|18352060|gb|BJ184113.1|BJ184113
EST:     GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTAC                         ATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC
genomic: GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTACgtgagttttt ... tgaattgtagATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC
EST: gi|100378826|gb|BY968708.1|BY968708
EST:     GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTAC                         ATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC
genomic: GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTACgtgagttttt ... tgaattgtagATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC
EST: gi|100378189|gb|BY949725.1|BY949725
EST:     GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTAC                         ATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC
genomic: GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTACgtgagttttt ... tgaattgtagATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC
EST: gi|67570645|gb|BJ943469.1|BJ943469
EST:     GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTAC                         ATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC
genomic: GAATGAAATGAAGGAAGAAGATACCACTACTTTACGTCTTGGGTGTTTACgtgagttttt ... tgaattgtagATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttgtcttttgatgagatgtgcaaagctgaatgcggctataattgaattgtagATAATTTTCATACCAACTGCCTTCAAGTACATTTGGAAAACTTTCCACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCT
        ttttgat  putative branch site (score: 4)
                                       tataattgaattgta  TA-rich tract