Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaggttatgtagctgacatcttggtcatctatattcttataagacaactgatctattgacatatttctgctggacttgacacttattgcctttttccagGTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAG

Basic information

species Physcomitrella patens
transcript PP1S98_141V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100419891|gb|BY975898.1|BY975898
EST:     CACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCT                         GTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAAT
genomic: CACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCTgtaagtcatg ... ctttttccagGTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAAT
EST: gi|162266973|gb|FC443048.1|FC443048
EST:     CACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCT                         GTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAAT
genomic: CACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCTgtaagtcatg ... ctttttccagGTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAAT
EST: gi|18352060|gb|BJ184113.1|BJ184113
EST:     CACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCT                         GTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAAT
genomic: CACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCTgtaagtcatg ... ctttttccagGTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAAT
EST: gi|100378826|gb|BY968708.1|BY968708
EST:     CACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCT                         GTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAAT
genomic: CACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCTgtaagtcatg ... ctttttccagGTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAAT
EST: gi|100378189|gb|BY949725.1|BY949725
EST:     CACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCT                         GTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAAT
genomic: CACCACATACAGCCCCTGCTGGGTTTGTCTGCCCTTCGTGTCCTACAGCTgtaagtcatg ... ctttttccagGTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caactgatctattgacatatttctgctggacttgacacttattgcctttttccagGTTTGGCCCCCAAACAAGTATTTCAAGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAG
                                     cttattgcctttttcc  CT-rich tract
              acatattt  TA-rich tract