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...ggtaattcatatgaacagctttttcgaacatcttacgataatcttattatgaagcaattatacgtagtttgattgggtggttggtcttgttgcactgcagAGTGCTATTGAAAAAATTCTGCCACAGTTTGAGAAAACAACACTTGCAAGGTTGGAGGCTGCTATGATCAGGCAACTCAAGACTCAATTTCAAACGACTG
species | Physcomitrella patens |
transcript | PP1S97_82V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGAGACTTTCCAG AGTGCTATTGAAAAAATTCTGCCACAGTTTGAGAAAACAACACTTGCAAGGEST: gi|100395095|gb|BY953603.1|BY953603
genomic: CTGAGACTTTCCAGgtatgaccta ... tgcactgcagAGTGCTATTGAAAAAATTCTGCCACAGTTTGAGAAAACAACACTTGCAAGG
EST: TTCAACCTCTCCAAAAATCAGTGTCCACAGGAGCGACTGAGACTTTCCAG AGTGCTATTGAAAAAATTCTGCCACAGTTTGAGAAAACAACACTTGCAAGGEST: gi|162183650|gb|FC359891.1|FC359891
genomic: TTCAACCTCTCCAAAAATCAGTGTCCACAGGAGCGACTGAGACTTTCCAGgtatgaccta ... tgcactgcagAGTGCTATTGAAAAAATTCTGCCACAGTTTGAGAAAACAACACTTGCAAGG
EST: TTCAACCTCTCCAAAAATCAGTGTCCACAGGAGCGACTGAGACTTTCCAG AGTGCTATTGAAAAAATTCTGCCACAGTTTGAGAAAACAACACTTGCAAGGEST: gi|162181146|gb|FC357292.1|FC357292
genomic: TTCAACCTCTCCAAAAATCAGTGTCCACAGGAGCGACTGAGACTTTCCAGgtatgaccta ... tgcactgcagAGTGCTATTGAAAAAATTCTGCCACAGTTTGAGAAAACAACACTTGCAAGG
EST: TTCAACCTCTCCAAAAATCAGTGTCCACAGGAGCGACTGAGACTTTCCAG AGTGCTATTGAAAAAATTCTGCCACAGTTTGAGAAAACAACACTTGCAAGG
genomic: TTCAACCTCTCCAAAAATCAGTGTCCACAGGAGCGACTGAGACTTTCCAGgtatgaccta ... tgcactgcagAGTGCTATTGAAAAAATTCTGCCACAGTTTGAGAAAACAACACTTGCAAGG
attatgaagcaattatacgtagtttgattgggtggttggtcttgttgcactgcagAGTGCTATTGAAAAAATTCTGCCACAGTTTGAGAAAACAACACTTGCAAGGTTGGAGGCTGCTATGATCAGGCAACTCAAGACTCAATTTCAAACGACTG
gtttgat putative branch site (score: 4)
tcttgtt putative PPT
aattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtaattcatatgaacagctttttcgaacatcttacgataatcttattatgaagcaattatacgtagtttgattgggtggttggtcttgttgcactgcagAGTGCTATTGAAAAAATTCTGCCACAGTTTGAGAAAACAACACTTGCAAGGTTGGAGGCTGCTATGATCAGGCAACTCAAGACTCAATTTCAAACGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT