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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctcaaacaacatgtgaggttgacactgtagtaaaacctccgttctaaattgtttcaaattatttctaaacagctgtgagaatttgttataatgaattggaattgacgatctgatgggtgaacttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGGTCTTGTCAATCCATGTCAGCACAGCTAAGCACTGCCTTCTATAGGGGTA

Basic information

species Physcomitrella patens
transcript PP1S97_82V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278612|gb|FC455010.1|FC455010
EST:     TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAG                         GAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
genomic: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaa ... ttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
EST: gi|100395095|gb|BY953603.1|BY953603
EST:     TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAG                         GAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
genomic: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaa ... ttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
EST: gi|162185543|gb|FC361267.1|FC361267
EST:     TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAG                         GAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
genomic: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaa ... ttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
EST: gi|162183650|gb|FC359891.1|FC359891
EST:     TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAG                         GAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
genomic: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaa ... ttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
EST: gi|162181146|gb|FC357292.1|FC357292
EST:     TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAG                         GAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
genomic: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaa ... ttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatttgttataatgaattggaattgacgatctgatgggtgaacttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGGTCTTGTCAATCCATGTCAGCACAGCTAAGCACTGCCTTCTATAGGGGTA
     ttgttataatgaatt  TA-rich tract