1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtggatgttcaacacacattgatgtcgttactatttagtttgactagttatgctgacgtaccaactgaagtacttctaaacagtattatctttttcagcataaccagtatagagttagccagtcattaatacggcgcttttttcatccagGCGCTCTCGGCACAACAATTGGAACAGACTTTAGATCCAACCATTGAGCTACGCAAACTGGTTCATGAAGGAAAAATGGAGGAGGCCTTCAACAAAGCAC
species | Physcomitrella patens |
transcript | PP1S97_82V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGTCGCGATATGGCGAGATTCAGCAGAGCAAAGGGAGCTTACCTGAAAAG GCGCTCTCGGCACAACAATTGGAACAGACTTTAGATCCAACCATTGAGCTAEST: gi|100395095|gb|BY953603.1|BY953603
genomic: TGTCGCGATATGGCGAGATTCAGCAGAGCAAAGGGAGCTTACCTGAAAAGgtggatgttc ... tttcatccagGCGCTCTCGGCACAACAATTGGAACAGACTTTAGATCCAACCATTGAGCTA
EST: TGTCGCGATATGGCGAGATTCAGCAGAGCAAAGGGAGCTTACCTGANAAG GCGCTCTCGGCACAACAATTGGAACAGACTTTAGATCCAACCATTGAGCTAEST: gi|162185543|gb|FC361267.1|FC361267
genomic: TGTCGCGATATGGCGAGATTCAGCAGAGCAAAGGGAGCTTACCTGAAAAGgtggatgttc ... tttcatccagGCGCTCTCGGCACAACAATTGGAACAGACTTTAGATCCAACCATTGAGCTA
EST: TGTCGCGATATGGCGAGATTCAGCAGAGCAAAGGGAGCTTACCTGAAAAG GCGCTCTCGGCACAACAATTGGAACAGACTTTAGATCCAACCATTGAGCTA
genomic: TGTCGCGATATGGCGAGATTCAGCAGAGCAAAGGGAGCTTACCTGAAAAGgtggatgttc ... tttcatccagGCGCTCTCGGCACAACAATTGGAACAGACTTTAGATCCAACCATTGAGCTA
cagcataaccagtatagagttagccagtcattaatacggcgcttttttcatccagGCGCTCTCGGCACAACAATTGGAACAGACTTTAGATCCAACCATTGAGCTACGCAAACTGGTTCATGAAGGAAAAATGGAGGAGGCCTTCAACAAAGCAC
cattaat putative branch site (score: 3)
cgcttttttcatcc putative PPT
tcattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggatgttcaacacacattgatgtcgttactatttagtttgactagttatgctgacgtaccaactgaagtacttctaaacagtattatctttttcagcataaccagtatagagttagccagtcattaatacggcgcttttttcatccagGCGCTCTCGGCACAACAATTGGAACAGACTTTAGATCCAACCATTGAGCTACGCAAACTGGTTCATGAAGGAAAAATGGAGGAGGCCTTCAACAAAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG