1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCTGCCACAGTTTGAGAAAACAACACTTGCAAGGTTGGAGGCTGCTATGATCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaacaacatgtgaggttgacactgtagtaaaacctccgttctaaattgtttcaaattatttctaaacagctgtgagaatttgttataatgaattggaattgacgatctgatgggtgaacttgttgccag
species | Physcomitrella patens |
transcript | PP1S97_82V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAG GAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGGEST: gi|100395095|gb|BY953603.1|BY953603
genomic: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaa ... ttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
EST: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAG GAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGGEST: gi|162185543|gb|FC361267.1|FC361267
genomic: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaa ... ttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
EST: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAG GAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGGEST: gi|162183650|gb|FC359891.1|FC359891
genomic: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaa ... ttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
EST: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAG GAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGGEST: gi|162181146|gb|FC357292.1|FC357292
genomic: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaa ... ttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
EST: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAG GAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
genomic: TCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaa ... ttgttgccagGAATCACTTCGGAGTGGCTTTGAGAGTTTAGTGATACCAGCATTTGAACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGCCACAGTTTGAGAAAACAACACTTGCAAGGTTGGAGGCTGCTATGATCAGGCAACTCAAGACTCAATTTCAAACGACTGGGAGACAAGCAATGCAGgtatctcaaacaacatgtgaggttgacactgtagtaaaacctccgttctaaattgtttcaaattatttctaaacagctgtgagaatttgttataatgaattggaattgacgatctgatgggtgaacttgttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA