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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttactgcccatctcacatgattagctgaaagttgcacgttcctttctactgttcattgaagatacaattcctgagcagttgtgagcagagagaggtgtagataaatgagcgctgatagtctgtttacgtattttcctgttactgttcgctcatattcctctttcatgataactgtgtccagCTTGACCCCAGTGACCTTTCAACGATGCCTCCGCCTTTGAGCCAAGGAGTGTTGCTGTCTCTGGTGCGAAACTTGTCCTTTGATCTGCACAAGGACACAG

Basic information

species Physcomitrella patens
transcript PP1S97_82V6.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278612|gb|FC455010.1|FC455010
EST:     AAGCACTGTCATCTAGTGAATTTCAACTGGTTTCTTGGCTGTGCCAACAG                         CTTGACCCCAGTGACCTTTCAACGATGCCTCCGCCTTTGAGCCAAGGAGTG
genomic: AAGCACTGTCATCTAGTGAATTTCAACTGGTTTCTTGGCTGTGCCAACAGgtttactgcc ... ctgtgtccagCTTGACCCCAGTGACCTTTCAACGATGCCTCCGCCTTTGAGCCAAGGAGTG
EST: gi|100395095|gb|BY953603.1|BY953603
EST:     AGCACTGTCATCTAGTGAATTTCNNACTGGTT-CNTGNCTGTGCCNACAG                         CTTGACCCCAGTGACCTTTTCA-CGGATGC-TCCGCCTTTGAGCCAAGGAG
genomic: AGCACTGTCATCTAGTGAATTTCA-ACTGGTTTCTTGGCTGTGCCAACAGgtttactgcc ... ctgtgtccagCTTGACCCCAGTGACCTTT-CAACG-ATGCCTCCGCCTTTGAGCCAAGGAG
EST: gi|162185543|gb|FC361267.1|FC361267
EST:     AAGCACTGTCATCTAGTGAATTTCAACTGGTTTCTTGGCTGTGCCAACAG                         CTTGACCCCAGTGACCTTTCAACGATGCCTCCGCCTTTGAGCCAAGGAGTG
genomic: AAGCACTGTCATCTAGTGAATTTCAACTGGTTTCTTGGCTGTGCCAACAGgtttactgcc ... ctgtgtccagCTTGACCCCAGTGACCTTTCAACGATGCCTCCGCCTTTGAGCCAAGGAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtattttcctgttactgttcgctcatattcctctttcatgataactgtgtccagCTTGACCCCAGTGACCTTTCAACGATGCCTCCGCCTTTGAGCCAAGGAGTGTTGCTGTCTCTGGTGCGAAACTTGTCCTTTGATCTGCACAAGGACACAG
                                       tgataac  putative branch site (score: 2)
                       tcatatt  TA-rich tract