1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attgaagctctttagaatgattagaaaggtctagtatggattttgcctgcaacaattgatactcaggagctgataaccatttttgtttaactcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG
species | Physcomitrella patens |
transcript | PP1S96_201V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAG TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACEST: gi|37845890|gb|BJ603898.1|BJ603898
genomic: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAGgtttctcttc ... ctcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAAC
EST: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAG TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACEST: gi|208393921|gb|DC946131.1|DC946131
genomic: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAGgtttctcttc ... ctcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAAC
EST: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAG TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACEST: gi|67694496|gb|BJ954729.1|BJ954729
genomic: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAGgtttctcttc ... ctcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAAC
EST: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAG TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACEST: gi|208380316|gb|DC922738.1|DC922738
genomic: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAGgtttctcttc ... ctcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAAC
EST: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAG TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACEST: gi|208396709|gb|DC924321.1|DC924321
genomic: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAGgtttctcttc ... ctcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAAC
EST: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAG TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACEST: gi|37821806|gb|BJ579872.1|BJ579872
genomic: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAGgtttctcttc ... ctcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAAC
EST: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAG TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACEST: gi|208354332|gb|DC953780.1|DC953780
genomic: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAGgtttctcttc ... ctcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAAC
EST: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAG TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACEST: gi|208374496|gb|DC948444.1|DC948444
genomic: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAGgtttctcttc ... ctcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAAC
EST: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAG TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACEST: gi|37849810|gb|BJ607818.1|BJ607818
genomic: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAGgtttctcttc ... ctcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAAC
EST: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAG TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAAC
genomic: TTCATCTTTGTGTTCGCCTTGTTGCTGGTGGAGGCATCCGTGATACTCAGgtttctcttc ... ctcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAAC
cctgcaacaattgatactcaggagctgataaccatttttgtttaactcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG
ctctt CT-rich tract
atttttgtttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgaagctctttagaatgattagaaaggtctagtatggattttgcctgcaacaattgatactcaggagctgataaccatttttgtttaactcttgacagTGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC