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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttccttcacctcctattttgcataagaaatgtatcactaggtagccttgccaatactaaaactcgttaacgtttaacaattgggtccattaagaaaacaaatgctggactattattcggttttttttcaacattagcagaaacagcccatgcttatggaagacaatgttgcttgaacag

Basic information

species Physcomitrella patens
transcript PP1S96_201V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208399166|gb|DC916549.1|DC916549
EST:     TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG                         GTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
genomic: TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttc ... gcttgaacagGTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
EST: gi|37845890|gb|BJ603898.1|BJ603898
EST:     TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG                         GTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
genomic: TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttc ... gcttgaacagGTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
EST: gi|208393921|gb|DC946131.1|DC946131
EST:     TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG                         GTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
genomic: TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttc ... gcttgaacagGTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
EST: gi|67694496|gb|BJ954729.1|BJ954729
EST:     TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG                         GTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
genomic: TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttc ... gcttgaacagGTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
EST: gi|208380316|gb|DC922738.1|DC922738
EST:     TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG                         GTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
genomic: TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttc ... gcttgaacagGTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
EST: gi|208396709|gb|DC924321.1|DC924321
EST:     TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG                         GTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
genomic: TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttc ... gcttgaacagGTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
EST: gi|37821806|gb|BJ579872.1|BJ579872
EST:     TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG                         GTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
genomic: TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttc ... gcttgaacagGTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
EST: gi|208354332|gb|DC953780.1|DC953780
EST:     TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG                         GTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
genomic: TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttc ... gcttgaacagGTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
EST: gi|208374496|gb|DC948444.1|DC948444
EST:     TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG                         GTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
genomic: TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttc ... gcttgaacagGTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
EST: gi|37849810|gb|BJ607818.1|BJ607818
EST:     TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAG                         GTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC
genomic: TTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttc ... gcttgaacagGTGGACATTTGATGTGGAATTGCTCTACCTCTGCAAGAAGCTGCGCATCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGGCTTCAAGATGTTTACACGAGCTGCAGCTCGCAAATTATTTCACAACATGCGGTTGCGAAGgtgttgtttccttcacctcctattttgcataagaaatgtatcactaggtagccttgccaatactaaaactcgttaacgtttaacaattgggtccattaagaaaacaaatgctggactattattcggttttttttcaacattagcagaaacagcccatgcttatggaagacaatgttgcttgaacag

- - - - - - - - - - -  AGCTGC
- - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - CAGCTC