Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaccgaatttcttcgattctgctgaacttatatgaggattaatgaagccaacatcgtcgtttaatgaggtctcttaccagtcagtcacaacgtttacactgtccagttttgacataaattcaaataatgttgttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTTTTTGCTGGGGACAGTATCCCCATAGCTGTATGGGGCTCCCGAGCACATC

Basic information

species Physcomitrella patens
transcript PP1S96_201V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351033|gb|DC910496.1|DC910496
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATNGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|208399166|gb|DC916549.1|DC916549
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|208354666|gb|DC934310.1|DC934310
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|208393921|gb|DC946131.1|DC946131
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAGATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|100354883|gb|BY983614.1|BY983614
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|208374274|gb|DC940659.1|DC940659
EST:     ATTCTGACGGTGCCACTAGGTTTGCGGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|208372484|gb|DC940773.1|DC940773
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|208400210|gb|DC908871.1|DC908871
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|67694496|gb|BJ954729.1|BJ954729
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|208380316|gb|DC922738.1|DC922738
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|208396709|gb|DC924321.1|DC924321
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|37821806|gb|BJ579872.1|BJ579872
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|208360577|gb|DC930849.1|DC930849
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTC
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|208354332|gb|DC953780.1|DC953780
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|208374496|gb|DC948444.1|DC948444
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
EST: gi|100374133|gb|BY985678.1|BY985678
EST:     ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAA                         ATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT
genomic: ATTCTGACGGTGCCACTAGGTTTGCAGACTTGAGAAAGTTGGAATTGCAAgtaagtcacc ... gttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaacgtttacactgtccagttttgacataaattcaaataatgttgttccttcagATGTTGCGAAGCATGGCAGACCAGCACAAATTTGCGACAGAAGGCTCTGTTTTTGCTGGGGACAGTATCCCCATAGCTGTATGGGGCTCCCGAGCACATC
                    ttttgac  putative branch site (score: 3)
                                           ttgttccttc  putative PPT
                    ttttgacataaattca  TA-rich tract