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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTCACATATCTCGACCATCTGAGAAGTATATATCTTTGATACTACCAGCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttctattgttaatttcacttatattgagaattgtgatatcaagtgtgtacgttcatccctgcgtacatcattatgactggacacagtctgatacgacattaaagtgatatatccatccttgctgtgcacatgatgacgatccttgctgttctatgttcaacag

Basic information

species Physcomitrella patens
transcript PP1S96_201V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351033|gb|DC910496.1|DC910496
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|208354666|gb|DC934310.1|DC934310
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|208393921|gb|DC946131.1|DC946131
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|100354883|gb|BY983614.1|BY983614
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|208374274|gb|DC940659.1|DC940659
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGGGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|208372484|gb|DC940773.1|DC940773
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|208400210|gb|DC908871.1|DC908871
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|208380316|gb|DC922738.1|DC922738
EST:     CCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: CCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|18342663|gb|BJ174698.1|BJ174698
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|18361295|gb|BJ193361.1|BJ193361
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|100355017|gb|BY964959.1|BY964959
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|208360577|gb|DC930849.1|DC930849
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|208374496|gb|DC948444.1|DC948444
EST:     TGATGNAATGTTGAG                         -TATTTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: TGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
EST: gi|100374133|gb|BY985678.1|BY985678
EST:     GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAG                         TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG
genomic: GCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttc ... tgttcaacagTTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCCTCACATATCTCGACCATCTGAGAAGTATATATCTTTGATACTACCAGCATATAATGAGGAGGCAAGACTCCGCATCACCCTTGATGAAATGTTGAGgtatctcttctattgttaatttcacttatattgagaattgtgatatcaagtgtgtacgttcatccctgcgtacatcattatgactggacacagtctgatacgacattaaagtgatatatccatccttgctgtgcacatgatgacgatccttgctgttctatgttcaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA