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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcacgatatggaaaccttcttccttcatcttatattttatatttgttttttgtttccctctggtgtttaactttgcgtttacttcactagtttggtcactaattctggcatagttgtagtaattcaattgtatatgaacaatgtagcagattgtttgaacctttgggtcatctttgtcgtggggccag

Basic information

species Physcomitrella patens
transcript PP1S96_201V6.1
intron # 5
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351033|gb|DC910496.1|DC910496
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|208399166|gb|DC916549.1|DC916549
EST:     AGCGAGCCGACGACNAGTCANTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATAC-TTGGAGATTGCATCC
genomic: AGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|208354666|gb|DC934310.1|DC934310
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|208393921|gb|DC946131.1|DC946131
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|100354883|gb|BY983614.1|BY983614
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|208374274|gb|DC940659.1|DC940659
EST:     TTATCTTCAGAAGCGGGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|208372484|gb|DC940773.1|DC940773
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|208400210|gb|DC908871.1|DC908871
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|208380316|gb|DC922738.1|DC922738
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|208396709|gb|DC924321.1|DC924321
EST:     CTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: CTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|18342663|gb|BJ174698.1|BJ174698
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|18361295|gb|BJ193361.1|BJ193361
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|100355017|gb|BY964959.1|BY964959
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|208360577|gb|DC930849.1|DC930849
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|208354332|gb|DC953780.1|DC953780
EST:     TTCAGAAGCGAGCNGACGACNAGTCANTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|208374496|gb|DC948444.1|DC948444
EST:     -TATTTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
EST: gi|100374133|gb|BY985678.1|BY985678
EST:     TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAG                         ATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC
genomic: TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcac ... gtggggccagATAATTATTGTGGACGATGGCAGCACTGATAATACTTTGGAGATTGCATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTATCTTCAGAAGCGAGCCGACGACAAGTCATTCACCTATGAGgtatcctcacgatatggaaaccttcttccttcatcttatattttatatttgttttttgtttccctctggtgtttaactttgcgtttacttcactagtttggtcactaattctggcatagttgtagtaattcaattgtatatgaacaatgtagcagattgtttgaacctttgggtcatctttgtcgtggggccag

- - - - AGAAGC