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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGAGAAAAGACCGTCAAAGAGATTCAAACTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatctctgaatttcactttgtcttgttagtgaagtttaatttctcagcctcagaaacaatgtatttgtggtacattacttagttgattggcttg...

Basic information

species Physcomitrella patens
transcript PP1S94_133V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162215198|gb|FC391616.1|FC391616
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: gi|67725469|gb|BJ975728.1|BJ975728
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: gi|162217774|gb|FC394074.1|FC394074
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: gi|162170350|gb|FC346547.1|FC346547
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: gi|208397428|gb|DC916354.1|DC916354
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: gi|162208279|gb|FC384383.1|FC384383
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: gi|162233171|gb|FC408994.1|FC408994
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: gi|208388411|gb|DC945631.1|DC945631
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: gi|208368324|gb|DC955521.1|DC955521
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: gi|18338002|gb|BJ170026.1|BJ170026
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: gi|208350444|gb|DC926191.1|DC926191
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: gi|208388518|gb|DC953154.1|DC953154
EST:     CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG                         GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATAGAGAAAAGACCGTCAAAGAGATTCAAACTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatctctgaatttcactttgtcttgttagtgaagtttaatttctcagcctcagaaacaatgtatttgtggtacattacttagttgattggcttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaacaa