1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atggagctggtgtaaataaatgggtctcaattgatcagtaacgttatattcaatgaactctctactctcgtaactggcacaaattgcattttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTACAAAAGGTGACGGTGCATCAGTGAACAGTTCGAAAGTAGATTCTGTCG
species | Physcomitrella patens |
transcript | PP1S94_133V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|67725469|gb|BJ975728.1|BJ975728
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|162217774|gb|FC394074.1|FC394074
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|162170350|gb|FC346547.1|FC346547
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|208397428|gb|DC916354.1|DC916354
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|162208279|gb|FC384383.1|FC384383
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|162233171|gb|FC408994.1|FC408994
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|208388411|gb|DC945631.1|DC945631
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|208368324|gb|DC955521.1|DC955521
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|18338002|gb|BJ170026.1|BJ170026
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|208350444|gb|DC926191.1|DC926191
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|208388518|gb|DC953154.1|DC953154
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
atattcaatgaactctctactctcgtaactggcacaaattgcattttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTACAAAAGGTGACGGTGCATCAGTGAACAGTTCGAAAGTAGATTCTGTCG
tcgtaac putative branch site (score: 2)
ttttgttt putative PPT
attttgttt TA-rich tract