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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagattctaaccaatctcagtttcgaagtaattgaatctattatcgtcacaagtcttaaaacactttggcaatattcttacttacaagtgatatgtgggcttatttgtgatacag

Basic information

species Physcomitrella patens
transcript PP1S94_133V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162215198|gb|FC391616.1|FC391616
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: gi|67725469|gb|BJ975728.1|BJ975728
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: gi|162217774|gb|FC394074.1|FC394074
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: gi|162170350|gb|FC346547.1|FC346547
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: gi|208397428|gb|DC916354.1|DC916354
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: gi|162208279|gb|FC384383.1|FC384383
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCAGTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCACCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: gi|162233171|gb|FC408994.1|FC408994
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: gi|208388411|gb|DC945631.1|DC945631
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: gi|208368324|gb|DC955521.1|DC955521
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: gi|18338002|gb|BJ170026.1|BJ170026
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: gi|208350444|gb|DC926191.1|DC926191
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: gi|208388518|gb|DC953154.1|DC953154
EST:     CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG                         GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagattctaaccaatctcagtttcgaagtaattgaatctattatcgtcacaagtcttaaaacactttggcaatattcttacttacaagtgatatgtgggcttatttgtgatacag

- - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - CTGCAG