1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCAGTGAATTGCCGTGGCAGTTGCCGAGGAAGGGTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctccagactgaacttgtgtttcatgttccagtgcctcacattccacttccttgtcaatccggtagcacggaagttgtcctgcaaaacactttcttatttcggaccttggacactttttgcag
species | Physcomitrella patens |
transcript | PP1S94_133V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|67725469|gb|BJ975728.1|BJ975728
genomic: CTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|162217774|gb|FC394074.1|FC394074
genomic: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|162170350|gb|FC346547.1|FC346547
genomic: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|208397428|gb|DC916354.1|DC916354
genomic: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|162208279|gb|FC384383.1|FC384383
genomic: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: AGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|162233171|gb|FC408994.1|FC408994
genomic: AGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|208388411|gb|DC945631.1|DC945631
genomic: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|208368324|gb|DC955521.1|DC955521
genomic: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|18338002|gb|BJ170026.1|BJ170026
genomic: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|208350444|gb|DC926191.1|DC926191
genomic: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|208388518|gb|DC953154.1|DC953154
genomic: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
genomic: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAGTGAATTGCCGTGGCAGTTGCCGAGGAAGGGTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctccagactgaacttgtgtttcatgttccagtgcctcacattccacttccttgtcaatccggtagcacggaagttgtcctgcaaaacactttcttatttcggaccttggacactttttgcag
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