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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTGCAGGTGCCGTACACAGCTGCGGATGATTCCTTCCTAGACAAGGTTTTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgcttaatactaatttgatccgtatctagggaatgactattatttcgagttcaggtctttagttccgctcaccgcaaatctaatttccagcgcga...

Basic information

species Physcomitrella patens
transcript PP1S94_133V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100404235|gb|BY955323.1|BY955323
EST:     TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA                         ATTGGACGAAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCT
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCT
EST: gi|208361962|gb|DC943445.1|DC943445
EST:     TTTGCCAAATACCGCGACGCCNAGAATACCACTGTCTACATTTTGGACCA                         ATTGGACGGAAATTCTCTTGCAGTTGCAAA
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAA
EST: gi|67725469|gb|BJ975728.1|BJ975728
EST:     TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA                         ATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
EST: gi|100378304|gb|BY949784.1|BY949784
EST:     TTTGCCNAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA                         -TTGNACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCNTAACA-TGGCT
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGC-TAACAATGGCT
EST: gi|162217774|gb|FC394074.1|FC394074
EST:     TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA                         ATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
EST: gi|162170350|gb|FC346547.1|FC346547
EST:     TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA                         ATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
EST: gi|208397428|gb|DC916354.1|DC916354
EST:     TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA                         ATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
EST: gi|162233171|gb|FC408994.1|FC408994
EST:     GCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA                         ATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
genomic: GCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
EST: gi|208388411|gb|DC945631.1|DC945631
EST:     TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA                         ATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
EST: gi|208368324|gb|DC955521.1|DC955521
EST:     TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA                         ATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
EST: gi|18338002|gb|BJ170026.1|BJ170026
EST:     TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA                         ATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
EST: gi|208350444|gb|DC926191.1|DC926191
EST:     TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA                         ATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT