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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTGAGGCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacgcaacatgttggaagcacatggtttatgacaccactttgtgttttgcttgttaatcctatctttttgtgtgaaaaaactgtaaaattatca...

Basic information

species Physcomitrella patens
transcript PP1S92_53V6.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19784441|gb|BQ040174.1|BQ040174
EST:     GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA                         ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
genomic: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
EST: gi|162157910|gb|FC334896.1|FC334896
EST:     GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA                         ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
genomic: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
EST: gi|162257238|gb|FC433114.1|FC433114
EST:     TCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA                         ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
genomic: TCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
EST: gi|37829259|gb|BJ587271.1|BJ587271
EST:     GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA                         ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
genomic: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
EST: gi|162157909|gb|FC334895.1|FC334895
EST:     GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA                         ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
genomic: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
EST: gi|162196285|gb|FC375394.1|FC375394
EST:     GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA                         ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
genomic: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
EST: gi|162160589|gb|FC336358.1|FC336358
EST:     GCAGTTTTTTATTCTTTCCCCGACAAATGTTTCGAGTTGAAAGTTCAAAA                         ATACAATTNCAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
genomic: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA